Projects

From translational cancer immunology to biologics manufacturing, I build systems that connect data, decisions, and teams.

CosMx

Graph neural networks for spatial transcriptomics

Harvard BBS / Stanford Medicine - 2024 - present

GNN models (GCN, GAT, and message-passing variants) on CosMx LBCL datasets to forecast CAR T response weeks before infusion.

Outcome: Surfaced spatial immune niches linked to relapse; guiding patient stratification experiments.

SpatialGNNCAR T
Novartis

Novartis antibody discovery ML pipeline

Novartis Biologics - 2023

Built an end-to-end candidate triage system: sequence cleaning, structure-aware embeddings, and ranking models for affinity prediction.

Outcome: Improved hit rate and reduced experiment turnaround by 30%.

AntibodyML OpsDiscovery
Controls

Genentech bioreactor control system

Genentech Tech Ops - 2022

Designed adaptive control algorithms and telemetry dashboards for large-scale biologics manufacturing.

Outcome: Stabilized runs and cut manual overrides during pilot batches.

ManufacturingControlsTelemetry
TME

Stanford tumor microenvironment framework

Stanford Mackall Lab - 2022 - 2024

Mapped resistant tumor microenvironments across LBCL and DMG using multi-omic single-cell and spatial assays.

Outcome: Identified chemokine-driven myeloid states that drive CAR T resistance.

Single-cellIntercellularResistance
DDW

Automated manometry analysis (DDW 2021)

UCSD / Digestive Disease Week - 2021

Signal processing and visualization suite for gastrointestinal motility recordings.

Outcome: Adopted by the motility clinic for prospective studies.

SignalClinicalAutomation